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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21177174_21178355_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21177174 - 21178355
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCAAAC
U12 Branch Point Sequence:
TTTTTCCTCTCT
Flanking Amino Acid:
DGNNYEAPLRGRYCGTTMPH
Intron Amino Acid Position:
1696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
52.2
0.06
1.1
59
36
Major PPT
83.4
0.75
0.7
81.7
30.3
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
41.3
-0.5
3.7
80
42.1

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573