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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21178485_21178751_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21178485 - 21178751
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTTCTCAAGC
Flanking Amino Acid:
FHATYVASTSSCGGTFHMDR
Intron Amino Acid Position:
1739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.6
37
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
36.9
-1.5
2.9
47.3
41.1
Minor BPS
58
0.23
1.9
69.77
42

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573