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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21178885_21181109_F

Intron Information:

Intron Rank:
35
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21178885 - 21181109
Intron Length:
2225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAATGCA
5'SS Class:
major
3'SS Sequence:
GCTATTGAAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGCTCTTCCACT
Flanking Amino Acid:
SPGNRLQLSFITFQVESSKG
Intron Amino Acid Position:
1783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
70.4
33.4
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
60
0.22
1.1
54.5
43.9
Minor 5ss
34.8
-1.7
3.3
45.5
42.9
Minor BPS
51.7
0.13
2
72.55
44.5

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573