About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21181316_21182582_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21181316 - 21182582
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
GATTAGATATCT
Flanking Amino Acid:
DVGFRATFSHLYGNDIVGNR
Intron Amino Acid Position:
1852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
41.2
-0.5
2.5
64.29
45.1

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573