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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21185474_21185802_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21185474 - 21185802
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGATCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATATTAACA
Flanking Amino Acid:
CDYDKLIIRDGDTSLSPVLA
Intron Amino Acid Position:
2042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
72.9
31.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.7
0.67
0.9
77.4
35.6
Minor 5ss
28.5
-2.5
2.8
31.7
36.2
Minor BPS
62.7
0.4
1.6
72.9
38.8

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573