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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21185950_21186823_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21185950 - 21186823
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAATAT
U12 Branch Point Sequence:
TTTGCTTCAACT
Flanking Amino Acid:
GAGFNASYYKSCGGYLHADR
Intron Amino Acid Position:
2091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
55.2
0.13
1.2
53
41.2
Major PPT
83.2
0.75
0.7
76.2
32.4
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
70.7
0.73
1.6
87.98
37.6

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573