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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21187015_21187703_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21187015 - 21187703
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
ATGACCTTAGCA
Flanking Amino Acid:
ASCNHGDYVELKNGLDAAAP
Intron Amino Acid Position:
2155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
63.4
0.42
1.6
70.88
41

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573