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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21187888_21189083_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21187888 - 21189083
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTG
Flanking Amino Acid:
FKLKYEAKSLDCGGNIYIND
Intron Amino Acid Position:
2216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
57.7
0.1
1.6
63.03
39.8

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573