About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21189259_21190371_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21189259 - 21190371
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATATATC
5'SS Class:
major
3'SS Sequence:
TCTCCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATACATTGAACA
Flanking Amino Acid:
EDQFYIEPSQNCTSSYLEVR
Intron Amino Acid Position:
2274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1
74
34.5
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
80.8
0.69
0.7
73.3
31.6
Minor 5ss
47.4
-0.2
2.6
62.5
36.2
Minor BPS
50.5
0.01
1.6
62.62
36.5

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573