About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21192356_21192795_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21192356 - 21192795
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCTGAGAA
5'SS Class:
major
3'SS Sequence:
TTGATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGTATTTGATT
Flanking Amino Acid:
FVEIREYSASGNLLGRYCGN
Intron Amino Acid Position:
2404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.3
56.6
36.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
85.5
0.8
0.8
80.7
36.7
Minor 5ss
31.4
-2.1
3.2
35
43.4
Minor BPS
64.1
0.53
1.5
79.36
37.3

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573