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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21192937_21194871_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21192937 - 21194871
Intron Length:
1935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGATTT
5'SS Class:
major
3'SS Sequence:
TTGGGTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGTGTCCTAACA
Flanking Amino Acid:
FRLRFDSSAEACGGDFTAPV
Intron Amino Acid Position:
2451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
73.6
37.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
74.3
0.55
1
70.4
44.5
Minor 5ss
38.8
-1.3
3.4
56.5
47.8
Minor BPS
55
0.15
1.8
66.95
39.2

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573