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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21195054_21197055_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21195054 - 21197055
Intron Length:
2002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTAACCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTATTTTAACC
Flanking Amino Acid:
HWRCSSDYMAVYNGLRQNSP
Intron Amino Acid Position:
2512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69.7
0.44
1
63.5
37.8
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
71.2
0.64
1.2
75.38
34.7

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573