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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21204757_21206925_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21204757 - 21206925
Intron Length:
2169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTCTCCCACACA
Flanking Amino Acid:
FYATWTAESLGCGGILHSDS
Intron Amino Acid Position:
2804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
83.9
0.76
0.8
76
37.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
47.2
-0.2
2.4
67.55
44.9

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573