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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21209580_21211230_F

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21209580 - 21211230
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGGATTTTAACA
Flanking Amino Acid:
GRGFSASFISRCGRNFTSPE
Intron Amino Acid Position:
2919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.1
0.88
0.7
84.2
30.7
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
64.9
0.46
1.3
68.16
38.3

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573