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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21217591_21219705_F

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21217591 - 21219705
Intron Length:
2115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TTTCCCCTACAG
Flanking Amino Acid:
FGFQARYRTIACGGTFNGSV
Intron Amino Acid Position:
3034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
76.2
0.65
1
67
39.8
Major PPT
80.8
0.69
0.8
73.6
31.6
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
48.2
-0.2
2.1
63.25
43.9

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573