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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21219836_21220755_F

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21219836 - 21220755
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
ACGTACTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ACGTACTTTACA
Flanking Amino Acid:
TVGNSKAVALKFNSFQLEIS
Intron Amino Acid Position:
3077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.9
31.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.1
0.52
1
65.1
40.4
Minor 5ss
43.8
-0.7
2.5
54.1
37.3
Minor BPS
53.2
0.09
1.9
62.44
43.3

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573