About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21231306_21232169_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21231306 - 21232169
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
AQTCRYDYVKLYDGVNENAN
Intron Amino Acid Position:
3219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.4
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
39
-1.2
3.1
47.7
42.3
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573