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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21233067_21233802_F

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21233067 - 21233802
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAAAT
5'SS Class:
major
3'SS Sequence:
TATTGAATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
GTGTATTGAATT
Flanking Amino Acid:
NYLELQDSPTHSQGSAHRFC
Intron Amino Acid Position:
3343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
73.7
36.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
74.2
0.54
1
63.8
45.8
Minor 5ss
41.7
-0.9
2.9
58.4
45.9
Minor BPS
54.3
0.21
1.6
70.51
40.6

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573