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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21234249_21235312_F

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21234249 - 21235312
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAAGC
5'SS Class:
major
3'SS Sequence:
TTGTCCCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGTCCCTTGAAG
Flanking Amino Acid:
SIQCSHDFLEVRNGSNVQSP
Intron Amino Acid Position:
3452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.4
39.8
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
71.8
0.49
1
72.3
32.8
Minor 5ss
40
-1.1
2.8
52.9
43.9
Minor BPS
63.1
0.27
1.6
66.65
40.5

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573