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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21235479_21236202_F

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21235479 - 21236202
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
AGCTAATTAACT
Flanking Amino Acid:
YEITWTSSSSGCGGTLYGSS
Intron Amino Acid Position:
3507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.1
45
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
79.2
0.66
0.9
69.8
40.5
Minor 5ss
34.5
-1.8
3.4
44.4
44.4
Minor BPS
57.6
0.32
1.8
73.83
42.2

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573