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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21236439_21236843_F

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21236439 - 21236843
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTGTCTTTAATT
Flanking Amino Acid:
YPPAGPYCGMDTNIAPFTAT
Intron Amino Acid Position:
3586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.7
0.69
0.8
78.9
33.2
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
83.9
1.14
1
91.43
32.3

Associated Gene:

Gene:
CUBN
Ensembl Gene ID:
ENSAPLG00000003733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003922
21096379 - 21236951
140573