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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2123816_2176480_F

Intron Information:

Intron Rank:
142115
Intron Class:
major
Intron Phase:
Intron Coordinates:
2123816 - 2176480
Intron Length:
52665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CTCTGCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
78.7
0.65
0.8
71.5
33
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
45.5
-0.4
2.2
51.73
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041140
2122854 - 2177372
54519