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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21240116_21243079_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21240116 - 21243079
Intron Length:
2964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
GCGTCCCGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GGAGCCTGACGG
Flanking Amino Acid:
MFLSCKAMSKSLKKMV
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
59.7
0.22
1
50.1
39.3
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
39.7
-0.9
2
38.56
43.9

Associated Gene:

Gene:
RSU1
Ensembl Gene ID:
ENSAPLG00000003574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003678
21240098 - 21336794
96697