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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21243192_21248631_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21243192 - 21248631
Intron Length:
5440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TCTTCATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTCATAAACT
Flanking Amino Acid:
VSNMLDVPGLFTLSHITQLV
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
65.1
40.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.2
0.81
0.7
80.3
30.6
Minor 5ss
37.9
-1.4
3
53
43.7
Minor BPS
65.5
0.56
1.9
86.23
39.4

Associated Gene:

Gene:
RSU1
Ensembl Gene ID:
ENSAPLG00000003574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003678
21240098 - 21336794
96697