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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21248683_21264190_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21248683 - 21264190
Intron Length:
15508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ACTTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTTTTTTCACA
Flanking Amino Acid:
QLVLSHNKLTTVPANIADLR
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.5
0.78
0.8
79.7
31.7
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
58.7
0.27
1.7
68.42
38.7

Associated Gene:

Gene:
RSU1
Ensembl Gene ID:
ENSAPLG00000003574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003678
21240098 - 21336794
96697