About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21264312_21267333_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21264312 - 21267333
Intron Length:
3022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCACCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCCTTTTCACC
Flanking Amino Acid:
SLQKLKHLNLGMNRLNTLPR
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72.4
39.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.2
0.68
0.7
74.6
29.5
Minor 5ss
33.3
-1.9
3
36.7
40.7
Minor BPS
54.4
0.12
1.7
66.58
39.6

Associated Gene:

Gene:
RSU1
Ensembl Gene ID:
ENSAPLG00000003574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003678
21240098 - 21336794
96697