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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21267453_21268972_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21267453 - 21268972
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
ATTTAATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCTATTTAATT
Flanking Amino Acid:
NSLPGNFFYLTTLRALYLSD
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
68.8
36.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.2
0.7
0.9
74.5
39.4
Minor 5ss
35
-1.7
3
40.5
39.4
Minor BPS
66
0.58
1.5
77.31
39.6

Associated Gene:

Gene:
RSU1
Ensembl Gene ID:
ENSAPLG00000003574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003678
21240098 - 21336794
96697