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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21282312_21336691_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21282312 - 21336691
Intron Length:
54380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
TTTGTCTTATTT
Flanking Amino Acid:
FEYIRSETYKYLYGRHMQAN
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
86.4
28.9
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
87
0.83
0.7
81
30.8
Minor 5ss
43.5
-0.7
2.9
62.1
37.1
Minor BPS
65.2
0.56
1.7
82.89
39.2

Associated Gene:

Gene:
RSU1
Ensembl Gene ID:
ENSAPLG00000003574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003678
21240098 - 21336794
96697