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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21361759_21364782_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21361759 - 21364782
Intron Length:
3024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGCC
5'SS Class:
major
3'SS Sequence:
GTATTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTTCTTAACC
Flanking Amino Acid:
MWADLCKNNQVRASAIAQDA
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
63.2
36.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.4
0.55
1
70.5
40.1
Minor 5ss
24.9
-2.9
3.3
32.9
42.4
Minor BPS
85.2
1.08
1
86.92
29.7

Associated Gene:

Gene:
C1QL3
Ensembl Gene ID:
ENSAPLG00000001458
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001448
21361171 - 21364962
3792