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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21368554_21371957_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21368554 - 21371957
Intron Length:
3404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGCT
5'SS Class:
major
3'SS Sequence:
TTTACCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CACTTTTTACCT
Flanking Amino Acid:
DMPSDNERIARVRMLINEGY
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
71.5
38.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.6
0.82
0.8
81
30.7
Minor 5ss
47
-0.3
2.9
68.1
42.9
Minor BPS
55.3
0.24
1.6
67.59
44

Associated Gene:

Gene:
PTER
Ensembl Gene ID:
ENSAPLG00000031164
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031293
21368343 - 21375211
6869