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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_213747_225808_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
213747 - 225808
Intron Length:
12062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAAC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCATCTCTAATG
Flanking Amino Acid:
ASIPSVHINQSRKGADPERE
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
34.5
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
26.9
-2.6
3
33.2
42.3
Minor BPS
49.6
-0.1
1.8
52.17
43.1

Associated Gene:

Gene:
AGAP3
Ensembl Gene ID:
ENSAPLG00000009810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010208
161522 - 246527
85006