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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21538103_21553365_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21538103 - 21553365
Intron Length:
15263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTCCC
5'SS Class:
major
3'SS Sequence:
TTTTTGTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTTCTGTTATT
Flanking Amino Acid:
GRHHLLPLGASKRAFKSFPE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
61.6
41.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
39.6
-1.2
3.1
54
43.2
Minor BPS
55.4
0.25
2.3
83.31
38.3

Associated Gene:

Gene:
MINDY3
Ensembl Gene ID:
ENSAPLG00000012165
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026752
21537708 - 21585198
47491