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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21543266_21546078_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21543266 - 21546078
Intron Length:
2813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCCATTTAACA
Flanking Amino Acid:
TVNQCLQWHGGFVFSESEST
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
76.9
0.61
0.9
72.8
35.9
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
65.7
0.49
1.5
73.69
37.9

Associated Gene:

Gene:
MINDY3
Ensembl Gene ID:
ENSAPLG00000012165
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025010
21542113 - 21585198
43086