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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21553481_21554001_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21553481 - 21554001
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAGG
5'SS Class:
major
3'SS Sequence:
ATTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
LFLYSVILTKGIENIKNEIE
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
66.5
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.5
0.82
0.8
81.2
35.6
Minor 5ss
37.6
-1.4
2.4
43.2
43.7
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
MINDY3
Ensembl Gene ID:
ENSAPLG00000012165
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026752
21537708 - 21585198
47491
ENSAPLT00000025010
21542113 - 21585198
43086
ENSAPLT00000012692
21538006 - 21585198
47193