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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21554529_21560043_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21554529 - 21560043
Intron Length:
5515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
WDGDRECSGMKLLGIHKQAT
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
67.9
39.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75.6
0.58
1
73.3
40.9
Minor 5ss
34.8
-1.7
2.9
37.7
40.9
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
MINDY3
Ensembl Gene ID:
ENSAPLG00000012165
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012692
21538006 - 21585198
47193
ENSAPLT00000026752
21537708 - 21585198
47491
ENSAPLT00000025010
21542113 - 21585198
43086