About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21560115_21561285_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21560115 - 21561285
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TGCAACTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTGCAACT
Flanking Amino Acid:
TLMESLRYCKVGSYLKSPKF
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.8
0.44
0.9
66
40.4
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
48.7
-0
2.2
76.2
40.8

Associated Gene:

Gene:
MINDY3
Ensembl Gene ID:
ENSAPLG00000012165
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026752
21537708 - 21585198
47491
ENSAPLT00000025010
21542113 - 21585198
43086
ENSAPLT00000012692
21538006 - 21585198
47193