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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21579405_21581743_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21579405 - 21581743
Intron Length:
2339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTACTCATACTT
Flanking Amino Acid:
KALDLVSDPEYVNLMKTKLD
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
77.1
0.61
0.9
73.1
37.2
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
48.8
-0
1.8
70.84
40.2

Associated Gene:

Gene:
MINDY3
Ensembl Gene ID:
ENSAPLG00000012165
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012692
21538006 - 21585198
47193
ENSAPLT00000026752
21537708 - 21585198
47491
ENSAPLT00000025010
21542113 - 21585198
43086