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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21591103_21591177_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21591103 - 21591177
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CCCCCGCTGACC
Flanking Amino Acid:
AVDFYIPEPGRVGVLVGAPK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
71.7
0.49
0.9
65.3
36.2
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
41.2
-0.7
2.3
47.54
42.4

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043