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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21591303_21602048_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21591303 - 21602048
Intron Length:
10746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTCAACAATC
Flanking Amino Acid:
GCHQIPFDNTNNRKIKVNGT
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
44.8
-0.4
2
56.73
41.9

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043