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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21607225_21608216_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21607225 - 21608216
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCAATT
Flanking Amino Acid:
QAGFSLDFYKNGDLIVGGPG
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.6
0.69
0.8
76.5
32.1
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
65.3
0.56
1.7
85.16
35.3

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043