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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21609397_21610525_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21609397 - 21610525
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAAAC
Flanking Amino Acid:
APPTYDDNYMGYSVAAGEFT
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.1
37.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.2
0.61
1
74.4
39
Minor 5ss
42.7
-0.8
2.9
47.1
48.3
Minor BPS
70.6
0.62
1.3
75.99
33.7

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043