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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21610571_21612307_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21610571 - 21612307
Intron Length:
1737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AATTGTTTATCT
Flanking Amino Acid:
AGEFTGDSEQELVAGVPRGA
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.7
0.78
0.8
81.5
35.9
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
54.9
0.23
2
75.26
41.6

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043