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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21612352_21613423_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21612352 - 21613423
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTACGTACT
5'SS Class:
major
3'SS Sequence:
TTTCTATTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTCCATATCT
Flanking Amino Acid:
VPRGAQNFGYVSIINSSDLT
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77.6
37
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.7
0.73
0.9
82.5
32.7
Minor 5ss
39.7
-1.2
3
56.7
40.6
Minor BPS
63.8
0.51
1.9
84.93
41.5

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043