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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21613481_21613669_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21613481 - 21613669
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATGATATGAAAG
Flanking Amino Acid:
TFIQNFTGEQMASYFGYTVA
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
42.9
-0.6
1.8
45.97
39.8

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043