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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21613723_21618516_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21613723 - 21618516
Intron Length:
4794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTAC
5'SS Class:
major
3'SS Sequence:
TTGACTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTTTGTTTGACT
Flanking Amino Acid:
TVAVSDVNNDGLDDILVGAP
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
69.3
38.5
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
78.8
0.65
0.9
69.8
41.3
Minor 5ss
38.7
-1.3
3.1
43.2
44.5
Minor BPS
72
0.77
1.7
90.81
33.2

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043