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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21631929_21634010_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21631929 - 21634010
Intron Length:
2082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGAATGTTATTT
Flanking Amino Acid:
AFGAGKAVVYRARPVVTVNA
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.3
0.57
0.8
73.8
31.3
Minor 5ss
33.3
-1.9
3.5
48.8
47.4
Minor BPS
44.3
-0.3
2.2
61.7
42.5

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043