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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21634119_21639185_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21634119 - 21639185
Intron Length:
5067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATACATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTGCTAATA
Flanking Amino Acid:
QLPGSQLLVACFTVRVCAAF
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.4
0.62
0.9
74
34.7
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
52.7
0.08
2.3
75.29
36.6

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043