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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21639935_21641064_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21639935 - 21641064
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTGTCTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATAT
Flanking Amino Acid:
RCQDFLVYLRDETEFRDKLS
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.4
0.62
0.8
72.9
32
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
57.2
0.3
1.9
82.2
38.8

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043