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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21641732_21642527_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21641732 - 21642527
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
ATGTTCTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GATGTTTTAATT
Flanking Amino Acid:
CIPDLQLSAMPDKDPLIIGE
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
68.9
38
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.7
0.49
0.9
66.5
39.2
Minor 5ss
33.9
-1.8
3.2
44.6
43.6
Minor BPS
63.3
0.5
1.3
72.9
38.6

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043