About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_21650126_21654640_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21650126 - 21654640
Intron Length:
4515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
AAATTAGTAACC
Flanking Amino Acid:
LGNPMVAGANFSTGIRFSVQ
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.3
34
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
88.5
0.87
0.7
80.8
36.8
Minor 5ss
31
-2.2
3.6
41.8
45.3
Minor BPS
46.9
-0.2
2.2
59.88
38.6

Associated Gene:

Gene:
ITGA8
Ensembl Gene ID:
ENSAPLG00000012455
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013106
21590921 - 21697963
107043